CueMol

CueMol is a computer program for the macromolecular structure visualization (CueMol was formerly called "Que"). CueMol aims to visualize the crystallographic models of macromolecules with the user-friendly interfaces. Currently supported files are molecular coordinates (PDB format), electron density (CCP4, CNS , and BRIX formats), MSMS surface data, and APBS electrostatic potential map.

Powered by Mozilla XULRunner, the application framework of Firefox and Thunderbird (and other mozilla-based application as well), CueMol2 now runs under both Windows and MacOS X in a similar GUI appearance. Linux version is also planned.

snapshot2_1.jpg snapshot2_2.jpg

snapshot2_2m.jpg snapshot2_1m.jpg

Please send any comments, questions, or requests about CueMol to
mm1.pngmm2.png or
Follow @cuemolnohito on Twitter

↑

What's new?

2012/5/10
Released version 2.0.1.212 for Windows and MacOS X.
2012/4/23
Released version 2.0.1.211 for Windows and MacOS X.
2012/3/28
Released version 2.0.1.208 for Windows and MacOS X.
2012/3/19
Released version 2.0.1.207 for Windows and MacOS X.
2012/3/13
CueMol viewer for iOS version 2.0.1.202 is now available from Apple Store.
2012/2/12
Released version 2.0.1.192 for Windows and MacOS X.
2012/1/26
Released CueMol viewer for iOS version 2.0.1.188.
2012/1/19
Released version 2.0.1.188 for Windows and MacOS X.
2012/1/2
Released version 2.0.1.185 for Windows. The installer bug was fixed.
2012/1/1
Windows version of 2.0.1.183 has some bug in the installer. I'll release the bug-fixed version soon.
2011/12/29
Released version 2.0.1.183 for MacOS X.
2011/11/21
Released version 2.0.1.172 for Windows and MacOS X.
2011/10/23
Released version 2.0.1.161 for Windows and MacOS X.
2011/9/17
Released version 2.0.1.153 for Windows and MacOS X.
2011/9/8
Released version 2.0.1.149 for Windows and MacOS X.
2011/8/30
Released version 2.0.1.148 for Windows and MacOS X.
2011/7/16
Released version 2.0.1.138 for Windows.
2011/5/28
Released version 2.0.0.125 for Windows and MacOS X.
2011/5/12
Released version 2.0.0.124 for Windows and MacOS X.
2011/5/3
Released version 2.0.0.122 for Windows and MacOS X.
2011/4/10
Released version 2.0.0.112 for Windows.
2011/4/3
Released version 2.0.0.108 for Windows and MacOS X.
2011/3/18
Released version 2.0.0.99 for Windows.
2011/3/15
Released version 2.0.0.98 for Windows and MacOS X.
2011/2/22
Released version 2.0.0.94 for MacOS X.
2011/2/20
Released version 2.0.0.94 for Windows.
↑

Main functions

  • Display proteins and nucleic acids
    Supported input format is PDB (molecular coordinates).
    • simple stick model
    • main-chain trace (Calpha backbone, phosphate backbone, ...)
    • ball-and-stick model
    • CPK model
  • Functions as a molecular viewer
    • Residue selection by clicking
    • Residue selection by chain and residue numbers
    • Change or create new display for the selected residues
    • Display symmetric molecules
    • Display unit cell
    • Hardware stereo support
    • Display the distance between atoms
    • Dump/restore the current state to/from the file (workspace)
  • Display electron-density maps
    Supported input formats are CCP4 (type2), X-PLOR/CNS (ascii), and BRIX
    • Mesh and surface display of electron-density maps (you can change the contour level dynamically!!)
    • Display electron density of an arbitrary (cubic) region.
  • Geometric object (solid/dashed lines)
  • Molecular surface object (generated by MSMS program)
↑

Menu
Last-modified: Thu, 10 May 2012 20:45:04 JST (6d)